Mir-19-P2c

MirGeneDB ID

Eca-Mir-19-P2c

Family name

MIR-19 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-19b-2

Paralogues

Eca-Mir-19-P1a Eca-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 110758667-110758732 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

GAAUAUUCAAAGACACUGCUACUUACGAUUAGUUUUGCAGGUUUGCAUUUCAGCGUAUAUAUGUAUAUAUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUAAUGUGUGCUGUCUACGGCUUUG

Get precursor sequence

Structure

        10        20          30         40         50        60   
GAAUAUUCAAAGACACUGCUAC--                 -  -|     UUU    GUAUAUAU 
                        UUACGAUUAGUUUUGCA GG UUUGCA   CAGC        \
                        AGUGUUAGUCAAAACGU CC AAACGU   GUCG        G
GUUUCGGCAUCUGUCGUGUGUAAU                 A  U^     ---    GUAUAUAU 
    120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-19-P2c_5p* (predicted)

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUUUCAGC -24

Get sequence

Mature sequence

Eca-Mir-19-P2c_3p

mirBase accession

MIMAT0013087

Sequence

43- UGUGCAAAUCCAUGCAAAACUGA -66

Get sequence