MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-19-P2c4

Family name MIR-19 (all species)
Seed GUGCAAA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xla-Mir-19-P2c3 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xtr-Mir-19-P2c 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030739.1: 74792343-74792399 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c4)
Mir-92-P2c4 NC_030739.1: 74792087-74792151 [-] UCSC Ensembl
Mir-92-P1c4 NC_030739.1: 74792213-74792274 [-] UCSC Ensembl
Mir-17-P2c4 NC_030739.1: 74792615-74792679 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUGGUGACUAAUGAUUCCCGCUCCGGUCAGUUUAGCUGGUUUGCAUCAGCUGGCUACUGUGCUGUGCAAAUCCAUGCAAAACUGACUGUAUUUGGGAAGGUUCUCCAGAAUUGCU
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Structure
        10         20         30         40         50       
ACUUGGUGACUAAUGAU-     CUC-          A  -   -|     U    UGGC 
                  UCCCG    CGGUCAGUUU GC UGG UUUGCA CAGC    U
                  AGGGU    GUCAGUCAAA CG ACC AAACGU GUCG    A
UCGUUAAGACCUCUUGGA     UUAU          A  U   U^     -    UGUC 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-19-P2c4_5p*

mirBase accessionNone
Sequence
0- AGUUUAGCUGGUUUGCAUCAGC -22
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Mature sequence

Xla-Mir-19-P2c4_3p

mirBase accessionNone
Sequence
34- UGUGCAAAUCCAUGCAAAACUGA -57
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