Mir-19-P2c

MirGeneDB ID

Oan-Mir-19-P2c

Family name

MIR-19 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-19b-1

Paralogues

Oan-Mir-19-P1a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041733.1: 24649885-24649944 [-]

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c NC_041733.1: 24649599-24649663 [-]
Mir-92-P1c NC_041733.1: 24649741-24649802 [-]
Mir-19-P2c NC_041733.1: 24649885-24649944 [-]
Mir-17-P4c NC_041733.1: 24650009-24650072 [-]
Mir-17-P2c NC_041733.1: 24650219-24650283 [-]
Mir-17-P1c NC_041733.1: 24650384-24650441 [-]

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

GGAAUUGGAAAGACAGUACUGCUUACAGUCAGUUUUGCAGGUUUGCAUCCCAGCGUAUACAAAUUGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUGGUGUUUGCUAUCUUGCUAAGUA

Get precursor sequence

Structure

        10           20        30         40         50          
GGAAUUGGAAAGACAGU---    C                 -  -|     UCC    GUAUA 
                    ACUG UUACAGUCAGUUUUGCA GG UUUGCA   CAGC     \
                    UGGU AGUGUUAGUCAAAACGU CC AAACGU   GUCG     C
AUGAAUCGUUCUAUCGUUUG    -                 A  U^     ---    UUAAA 
.       110       100         90        80        70