Mir-19-P2c3

MirGeneDB ID

Xla-Mir-19-P2c3

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-19b

Paralogues

Xla-Mir-19-P1a3 Xla-Mir-19-P1a4 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xla-Mir-19-P2c4

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xtr-Mir-19-P2c

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030738.1: 47238435-47238491 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c3)

Mir-92-P2c3 NC_030738.1: 47238172-47238237 [-] UCSC Ensembl
Mir-92-P1c3 NC_030738.1: 47238303-47238364 [-] UCSC Ensembl
Mir-19-P2c3 NC_030738.1: 47238435-47238491 [-] UCSC Ensembl
Mir-17-P4c3 NC_030738.1: 47238544-47238604 [-] UCSC Ensembl
Mir-17-P2c3 NC_030738.1: 47238694-47238758 [-] UCSC Ensembl
Mir-17-P1c3 NC_030738.1: 47238821-47238877 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACGCUUGGUGAUGGAUUCCUGCUCCUGUCAGUUUAGCUGGUUUGCAUCAGCUGGCUACUGUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCUGGGAAAGUUCUCUGGAAUUUCU

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Structure

        10         20         30         40         50       
CACGCUUGGUGAUGGAU-    -   CCU        A  -   -|     U    UGGC 
                  UCCU GCU   GUCAGUUU GC UGG UUUGCA CAGC    U
                  AGGG CGG   CAGUCAAA CG ACC AAACGU GUCG    A
UCUUUAAGGUCUCUUGAA    U   UGU        A  U   U^     -    UGUC 
     110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-19-P2c3_5p*

mirBase accession

None

Sequence

0- AGUUUAGCUGGUUUGCAUCAGC -22

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Mature sequence

Xla-Mir-19-P2c3_3p

mirBase accession

MIMAT0001347

Sequence

34- UGUGCAAAUCCAUGCAAAACUGA -57

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