MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-19-P2c

Family name MIR-19 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-19c
Paralogues Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Dre-Mir-19-P2d 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cja-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Eca-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Laf-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmr-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Neu-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pab-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr14: 31467045-31467105 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c)		 Mir-92-P2c chr14: 31466699-31466769 [-] UCSC Ensembl
Mir-19-P2c chr14: 31467045-31467105 [-] UCSC Ensembl
Mir-17-P4c chr14: 31467183-31467241 [-] UCSC Ensembl
Mir-17-P2c chr14: 31467386-31467450 [-] UCSC Ensembl
Seed GUGCAAA
Precursor
(pre-Mir +30nt flank)		 
GCUUAUGGAAAAGCCCUGUUAUCUGGGGUGAGUUUUGCAGGAUUGCAUCCGGCUUUAUUACAACAUGCUGUGCAAAUCCAUGCAAAACUCGCUGCGCCAGGGACAAACCACUUCUACAAUC
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Structure
        10        20           30         40         50          
GCUUAUGGAAAAGCCCUGUUA     ---             -   -|    UC    UUUAUU 
                     UCUGG   GGUGAGUUUUGCA GGA UUGCA  CGGC      \
                     GGACC   UCGCUCAAAACGU CCU AACGU  GUCG      A
CUAACAUCUUCACCAAACAG-     GCG             A   A^    --    UACAAC 
 .       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-19-P2c_5p*
mirBase accessionMIMAT0031940
Sequence 
0- AGUUUUGCAGGAUUGCAUCCGGC -23
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Mature sequence

Dre-Mir-19-P2c_3p
mirBase accessionMIMAT0001784
Sequence 
38- UGUGCAAAUCCAUGCAAAACUCG -61
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Proposed targets TargetScanFish: dre-miR-19c