Mir-19-P2a2

MirGeneDB ID

Dre-Mir-19-P2a2

Family name

MIR-19 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

Paralogues

Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Dre-Mir-19-P2a1 Dre-Mir-19-P2c Dre-Mir-19-P2d

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a2 Xtr-Mir-19-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr9: 53436416-53436475 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2a2)

Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-19-P2a2 chr9: 53436416-53436475 [-] UCSC Ensembl
Mir-17-P4a2 chr9: 53436542-53436606 [-] UCSC Ensembl
Mir-19-P1a2 chr9: 53436701-53436758 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

UAUUCGUGCUUUGUGCACACUGUCCUGGUUAGUUUUGCUGGUUUGCUGUCAGCGUUCGUAUCGUUGCUGUGCAAAUCCAUGCAAAACUGAUCAUAGCAGUGAGGAUUCUCCAAGCGGCGU

Get precursor sequence

Structure

        10          20        30         40         50         
UAUUCGUGCUUUGUGCA--      CC             -   -|    UGU    GUUCG 
                   CACUGU  UGGUUAGUUUUGC UGG UUUGC   CAGC     U
                   GUGACG  ACUAGUCAAAACG ACC AAACG   GUCG     A
UGCGGCGAACCUCUUAGGA      AU             U   U^    U--    UUGCU 
.       110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-19-P2a2_5p*

mirBase accession

None

Sequence

0- AGUUUUGCUGGUUUGCUGUCAGC -23

Get sequence

Mature sequence

Dre-Mir-19-P2a2_3p

mirBase accession

None

Sequence

37- UGUGCAAAUCCAUGCAAAACUGA -60

Get sequence