Mir-19-P2a

MirGeneDB ID

Gga-Mir-19-P2a

Family name

MIR-19 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-19b

Paralogues

Gga-Mir-19-P1a Gga-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

1: 149439972-149440032 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2a)

Mir-92-P1a 1: 149439857-149439915 [-] UCSC Ensembl
Mir-19-P2a 1: 149439972-149440032 [-] UCSC Ensembl
Mir-17-P4a 1: 149440105-149440163 [-] UCSC Ensembl
Mir-19-P1a 1: 149440280-149440337 [-] UCSC Ensembl
Mir-17-P2a 1: 149440419-149440483 [-] UCSC Ensembl
Mir-17-P1a 1: 149440570-149440630 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

UGUUGUUAAAUUGAACACUGUUCUCUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUGAUACUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCAGUGACAAGUCAGUCAGUAAAUG

Get precursor sequence

Structure

        10            20        30         40         50          
UGUUGUUAAAUUGAACA----|    CUC              -  -      UC    UGUAUG 
                     CUGUU   UGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                     GACGG   GUCAGUCAAAACGU CC AAACGU  GUCG      A
GUAAAUGACUGACUGAACAGU^    U--              A  U      --    UCUCAU 
 .       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-19-P2a_5p*

mirBase accession

MIMAT0026496

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-19b-5p
miRDB: MIMAT0026496

Mature sequence

Gga-Mir-19-P2a_3p

mirBase accession

MIMAT0001110

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

Get sequence