Mir-19-P2c

MirGeneDB ID

Gga-Mir-19-P2c

Family name

MIR-19 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-19b-2

Paralogues

Gga-Mir-19-P1a Gga-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

4: 3967505-3967564 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c 4: 3967217-3967281 [-] UCSC Ensembl
Mir-92-P1c 4: 3967357-3967418 [-] UCSC Ensembl
Mir-19-P2c 4: 3967505-3967564 [-] UCSC Ensembl
Mir-17-P4c 4: 3967641-3967701 [-] UCSC Ensembl
Mir-17-P2c 4: 3967813-3967877 [-] UCSC Ensembl
Mir-17-P1c 4: 3967949-3968006 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

AUGCCUUCCGGAGAGGUGCUGCUCACAGUCAGUUUUGCAGGUUUGCAUCCCAGCUUGCUAAAAUUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGGUGAAUAGCGGGGUUAGAA

Get precursor sequence

Structure

        10           20        30         40         50          
AUGCCUUCCGGAGAGGU---  UG U                -  -|     UCC    UUGCU 
                    GC  C CACAGUCAGUUUUGCA GG UUUGCA   CAGC     \
                    UG  G GUGUCAGUCAAAACGU CC AAACGU   GUCG     A
AAGAUUGGGGCGAUAAGUGG  GU -                A  U^     ---    UUAAA 
.       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-19-P2c_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUCCCAGC -24

Get sequence

Mature sequence

Gga-Mir-19-P2c_3p

mirBase accession

MIMAT0001110

Sequence

37- UGUGCAAAUCCAUGCAAAACUGA -60

Get sequence