MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-19b-2
Paralogues Gga-Mir-19-P1a  Gga-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
4: 3967505-3967564 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c 4: 3967217-3967281 [-] UCSC Ensembl
Mir-92-P1c 4: 3967357-3967418 [-] UCSC Ensembl
Mir-19-P2c 4: 3967505-3967564 [-] UCSC Ensembl
Mir-17-P4c 4: 3967641-3967701 [-] UCSC Ensembl
Mir-17-P2c 4: 3967813-3967877 [-] UCSC Ensembl
Mir-17-P1c 4: 3967949-3968006 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGCCUUCCGGAGAGGUGCUGCUCACAGUCAGUUUUGCAGGUUUGCAUCCCAGCUUGCUAAAAUUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGGUGAAUAGCGGGGUUAGAA
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Structure
        10           20        30         40         50          
AUGCCUUCCGGAGAGGU---  UG U                -  -|     UCC    UUGCU 
                    GC  C CACAGUCAGUUUUGCA GG UUUGCA   CAGC     \
                    UG  G GUGUCAGUCAAAACGU CC AAACGU   GUCG     A
AAGAUUGGGGCGAUAAGUGG  GU -                A  U^     ---    UUAAA 
.       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-19-P2c_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCAGGUUUGCAUCCCAGC -24
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Mature sequence

Gga-Mir-19-P2c_3p

mirBase accessionMIMAT0001110
Sequence
37- UGUGCAAAUCCAUGCAAAACUGA -60
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