Mir-17-P4c

MirGeneDB ID

Gga-Mir-17-P4c

Family name

MIR-17 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-20b

Paralogues

Gga-Mir-17-P1a Gga-Mir-17-P1c Gga-Mir-17-P2a Gga-Mir-17-P2c Gga-Mir-17-P4a

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

4: 3967641-3967701 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c 4: 3967217-3967281 [-] UCSC Ensembl
Mir-92-P1c 4: 3967357-3967418 [-] UCSC Ensembl
Mir-19-P2c 4: 3967505-3967564 [-] UCSC Ensembl
Mir-17-P4c 4: 3967641-3967701 [-] UCSC Ensembl
Mir-17-P2c 4: 3967813-3967877 [-] UCSC Ensembl
Mir-17-P1c 4: 3967949-3968006 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GCUCAGGAAGCAGCUGUGUCCUAGCAGUAUCAAAGUGCUCAUAGUGCAGGUAGCUUGGCAUUGGACCUACUGUAAUGUGGGCACUUACAGUACUGUUAGAUAAAGUGCGUCCCGGCUCGGG

Get precursor sequence

Structure

        10        20          30         40        50          
GCUCAGGAAGCAGCUGUGUC--          CA-|          G     G   CUUGGC 
                      CUAGCAGUAU   AAGUGCUCAUA UGCAG UAG      \
                      GAUUGUCAUG   UUCACGGGUGU AUGUC AUC      A
GGGCUCGGCCCUGCGUGAAAUA          ACA^          A     -   CAGGUU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-17-P4c_5p

mirBase accession

MIMAT0001411

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-20b-5p
miRDB: MIMAT0001411

Star sequence

Gga-Mir-17-P4c_3p*

mirBase accession

MIMAT0026551

Sequence

38- ACUGUAAUGUGGGCACUUACAGU -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-20b-3p
miRDB: MIMAT0026551