MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-20b
Paralogues Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Dre-Mir-17-P2c  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Dre-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr14: 31467183-31467241 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-92-P2c chr14: 31466699-31466769 [-] UCSC Ensembl
Mir-19-P2c chr14: 31467045-31467105 [-] UCSC Ensembl
Mir-17-P4c chr14: 31467183-31467241 [-] UCSC Ensembl
Mir-17-P2c chr14: 31467386-31467450 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUCUGUGUUGAGUUUGUCCUGGCAGUUCCAAAGUGCUCACAGUGCAGGUAGUGCCAGUGGAUCUACUGCAAUGUCUGCACUUCAAGUAUUGCCGGACGCCUUCUGCCUGCCACUGUG
Get precursor sequence
Structure
        10           20        30         40        50         
UGAUCUGUGUUGAGUUU---|   U      UCCA-      UC   G     G   UGCCA 
                    GUCC GGCAGU     AAGUGC  ACA UGCAG UAG     \
                    CAGG CCGUUA     UUCACG  UGU ACGUC AUC     G
GUGUCACCGUCCGUCUUCCG^   -      UGAAC      UC   A     -   UAGGU 
       110       100         90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-17-P4c_5p

mirBase accessionMIMAT0001778
Sequence
0- CAAAGUGCUCACAGUGCAGGUAG -23
Get sequence
Proposed targets TargetScanFish: dre-miR-20b
Star sequence

Dre-Mir-17-P4c_3p*

mirBase accessionMIMAT0031939
Sequence
36- ACUGCAAUGUCUGCACUUCAAGU -59
Get sequence