Mir-17-P4c

MirGeneDB ID

Bta-Mir-17-P4c

Family name

MIR-17 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-20b

Paralogues

Bta-Mir-17-P1a Bta-Mir-17-P1c Bta-Mir-17-P1d Bta-Mir-17-P2a Bta-Mir-17-P2c Bta-Mir-17-P4a Bta-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 17975938-17975998 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c NC_037357.1: 17975507-17975571 [-] UCSC Ensembl
Mir-92-P1c NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Mir-19-P2c NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Mir-17-P4c NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Mir-17-P2c NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Mir-17-P1c NC_037357.1: 17976339-17976397 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

UCAAAGCAUAAGAUCAGGUCCCAGUAGUACCAAAGUGCUCACAGUGCAGGUAGUUUUGGCAGCGCUCUACUGUAGUGUGGGCACUUCCAGUACUCUUGGAUGACGGCUCUUGCUGAUGCUG

Get precursor sequence

Structure

        10           20        30         40        50          
UCAAAGCAUAAGAUCAG---|   C  U     CA-           G     G   UUUUGG 
                    GUCC AG AGUAC   AAGUGCUCACA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUGU AUGUC AUC      C
GUCGUAGUCGUUCUCGGCAG^   U  -     ACC           G     -   UCGCGA 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-17-P4c_5p

mirBase accession

MIMAT0003796

Sequence

0- CAAAGUGCUCACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-20b

Star sequence

Bta-Mir-17-P4c_3p*

mirBase accession

None

Sequence

38- ACUGUAGUGUGGGCACUUCCAGU -61

Get sequence