Mir-17-P1c

MirGeneDB ID

Bta-Mir-17-P1c

Family name

MIR-17 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-106a

Paralogues

Bta-Mir-17-P1a Bta-Mir-17-P1d Bta-Mir-17-P2a Bta-Mir-17-P2c Bta-Mir-17-P4a Bta-Mir-17-P4c Bta-Mir-17-P4d

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 17976339-17976397 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c NC_037357.1: 17975507-17975571 [-] UCSC Ensembl
Mir-92-P1c NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Mir-19-P2c NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Mir-17-P4c NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Mir-17-P2c NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Mir-17-P1c NC_037357.1: 17976339-17976397 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

UUUUGCUUCAGGAAUAGGCCUUGGCCAUGUAAAAGUGCUUACAGUGCAGGUAGCUUUUUGAGAUCUACUGCAAUGCAAGCACUUCUUACAUUACCAUGGUGAUUUAAUCAAUGGCUACU

Get precursor sequence

Structure

        10          20        30         40        50         
UUUUGCUUCAGGAAUAG--   U   CC      -|       A  G     G   CUUUU 
                   GCC UGG  AUGUAA AAGUGCUU CA UGCAG UAG     \
                   UGG ACC  UACAUU UUCACGAA GU ACGUC AUC     U
UCAUCGGUAACUAAUUUAG   U   AU      C^       C  A     -   UAGAG 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-17-P1c_5p

mirBase accession

MIMAT0003784

Sequence

0- AAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-106a

Star sequence

Bta-Mir-17-P1c_3p*

mirBase accession

None

Sequence

36- ACUGCAAUGCAAGCACUUCUUAC -59

Get sequence