Mir-17-P1c

MirGeneDB ID

Neu-Mir-17-P1c

Family name

MIR-17 (all species)

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-17-P1a Neu-Mir-17-P2a Neu-Mir-17-P2c Neu-Mir-17-P4a Neu-Mir-17-P4c

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051820.1: 56057428-56057485 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c CM051820.1: 56056529-56056592 [-] UCSC Ensembl
Mir-92-P1c CM051820.1: 56056667-56056731 [-] UCSC Ensembl
Mir-19-P2c CM051820.1: 56056827-56056885 [-] UCSC Ensembl
Mir-17-P4c CM051820.1: 56056979-56057039 [-] UCSC Ensembl
Mir-17-P2c CM051820.1: 56057243-56057307 [-] UCSC Ensembl
Mir-17-P1c CM051820.1: 56057428-56057485 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GCUUUUCUGGAGACCGUGCCUCGGUUGUGUAAAAGUGCUUAUAGUGCAGGUAGGUCGGUGUAACUACUGCCCUGUGAGCACUUCCAACAUGACCACGGCAAUGGAUGAUUUGGGGCUU

Get precursor sequence

Structure

        10          20        30         40        50        
GCUUUUCUGGAGACCGU--   UC   UG   AA-|           U    G   GUCG 
                   GCC  GGU  UGU   AAGUGCUUAUAG GCAG UAG    G
                   CGG  CCA  ACA   UUCACGAGUGUC CGUC AUC    U
UUCGGGGUUUAGUAGGUAA   CA   GU   ACC^           C    -   AAUG 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-17-P1c_5p

mirBase accession

None

Sequence

0- AAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Star sequence

Neu-Mir-17-P1c_3p* (predicted)

mirBase accession

None

Sequence

35- ACUGCCCUGUGAGCACUUCCAAC -58

Get sequence