MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-106a
Paralogues Cpi-Mir-17-P1a  Cpi-Mir-17-P1d  Cpi-Mir-17-P2a  Cpi-Mir-17-P2c  Cpi-Mir-17-P4a  Cpi-Mir-17-P4c  Cpi-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584720: 2634299-2634357 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)
Mir-17-P1c JH584720: 2634299-2634357 [+] UCSC Ensembl
Mir-17-P2c JH584720: 2634454-2634518 [+] UCSC Ensembl
Mir-17-P4c JH584720: 2634668-2634729 [+] UCSC Ensembl
Mir-19-P2c JH584720: 2634792-2634851 [+] UCSC Ensembl
Mir-92-P1c JH584720: 2634933-2634994 [+] UCSC Ensembl
Mir-92-P2c JH584720: 2635069-2635133 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUCCUGGUGGAAGGGCCUUGAGUUGUGCAAAAGUGCUUACAGUGCAGGUAGUGUGUUGGUAUCUACUGCAGUGGAAGCACUUCUAGCAUUACAAUGGCAAUUCAAUCCCACGUUCUU
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Structure
        10           20        30         40        50         
UCAUCCUGGUGGAAGGG---| UUGA  U    AA-        A  G     G   UGUGU 
                    CC    GU GUGC   AAGUGCUU CA UGCAG UAG     \
                    GG    CA UACG   UUCACGAA GU ACGUC AUC     U
UUCUUGCACCCUAACUUAAC^ UAA-  U    AUC        G  G     -   UAUGG 
       110       100         90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-17-P1c_5p

mirBase accessionMIMAT0037721
Sequence
0- AAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Cpi-Mir-17-P1c_3p*

mirBase accessionNone
Sequence
36- ACUGCAGUGGAAGCACUUCUAGC -59
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