Mir-17-P1c

MirGeneDB ID

Tgu-Mir-17-P1c

Family name

MIR-17 (all species)

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-106

Paralogues

Tgu-Mir-17-P1a Tgu-Mir-17-P2a Tgu-Mir-17-P2c Tgu-Mir-17-P4a Tgu-Mir-17-P4c

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

4A: 6773566-6773623 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-17-P1c 4A: 6773566-6773623 [+] UCSC Ensembl
Mir-17-P2c 4A: 6773715-6773779 [+] UCSC Ensembl
Mir-17-P4c 4A: 6773912-6773972 [+] UCSC Ensembl
Mir-19-P2c 4A: 6774037-6774096 [+] UCSC Ensembl
Mir-92-P1c 4A: 6774233-6774294 [+] UCSC Ensembl
Mir-92-P2c 4A: 6774372-6774436 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

UUGUGUCUGGUGAUGGGCCUCAAGUUGUGCAAAAGUGCUUACAGUGCAGGUAGAGUUCAGGAUCUACUGCAGUUUAAGCACUUCUGGCAUUACUGUGGCGAUUCCGUGGUGGUGGCAG

Get precursor sequence

Structure

        10           20        30         40        50        
UUGUGUCUGGUGAUGGG---| UCA   U    AA-         CAG     G   AGUU 
                    CC   AGU GUGC   AAGUGCUUA   UGCAG UAG    C
                    GG   UCA UACG   UUCACGAAU   ACGUC AUC    A
GACGGUGGUGGUGCCUUAGC^ UG-   U    GUC         UUG     -   UAGG 
      110       100         90        80        70         60