MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-92-P2c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-363
Paralogues Tgu-Mir-92-P1a  Tgu-Mir-92-P1c  Tgu-Mir-92-P1d  Tgu-Mir-92-P2a 
Orthologues Aca-Mir-92-P2c  Ami-Mir-92-P2c  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2c  Cel-Mir-92  Cfa-Mir-92-P2c  Cli-Mir-92-P2c  Cmi-Mir-92-P2c  Cpi-Mir-92-P2c  Cpo-Mir-92-P2c  Dno-Mir-92-P2c  Dre-Mir-92-P2c  Esc-Mir-92  Ete-Mir-92-P2c  Gga-Mir-92-P2c  Gja-Mir-92-P2c  Gmo-Mir-92-P2c  Hsa-Mir-92-P2c  Isc-Mir-92  Lch-Mir-92-P2c  Loc-Mir-92-P2c  Mdo-Mir-92-P2c  Mml-Mir-92-P2c  Mmu-Mir-92-P2c  Mun-Mir-92-P2c  Oan-Mir-92-P2c  Obi-Mir-92  Ocu-Mir-92-P2c  Pbv-Mir-92-P2c  Rno-Mir-92-P2c  Sha-Mir-92-P2c  Sme-Mir-92  Spt-Mir-92-P2c  Sto-Mir-92-P2c  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xtr-Mir-92-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)
4A: 6774372-6774436 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2c)
Mir-17-P1c 4A: 6773566-6773623 [+] UCSC Ensembl
Mir-17-P4c 4A: 6773912-6773972 [+] UCSC Ensembl
Mir-19-P2c 4A: 6774037-6774096 [+] UCSC Ensembl
Mir-92-P1c 4A: 6774233-6774294 [+] UCSC Ensembl
Mir-92-P2c 4A: 6774372-6774436 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUUGGUAAAGCUCUUGUUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUUAGUUUAGUAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAAGACCUUCAUCGCUGACAGUGUG
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Structure
        10          20        30        40        50        60  
AGUUUGGUAAAGCUCUU--|      U   GU         CA  A         GAUUAGUU 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGAACG CAA  GUCUACCUA  GC ACGUUAAAA        A
GUGUGACAGUCGCUACUUC^      C   AU         UG  -         AGAGGAUG 
   120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-92-P2c_5p*

mirBase accessionMIMAT0026972
Sequence
0- CGGGUGGAUCACGAUGCAAUUUU -23
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Mature sequence

Tgu-Mir-92-P2c_3p

mirBase accessionMIMAT0014501
Sequence
43- AAUUGCACGGUAUCCAUCUGUA -65
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