Mir-92-P1d

MirGeneDB ID

Tgu-Mir-92-P1d

Family name

MIR-92 (all species)

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

Paralogues

Tgu-Mir-92-P1a Tgu-Mir-92-P1c Tgu-Mir-92-P2a Tgu-Mir-92-P2c

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(TaeGut1_add)

25: 968965-969027 [+] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

CGGCGGCUCCGCUCCCUCCGGGGCGGCGGGAGGGCCGGGAUGCGGUGCAGUGUUGUGCUCUCGCCCACCAAUAUUGCACUCGUCCCGGCCUCCCGCCGCCGCGGGUUGCGCCGGUGGGACCGG

Get precursor sequence

Structure

        10          20        30        40        50        60  
CGGCGGCUCCGCUCCCU--|  G            G        C           GUGCUCU 
                   CCG GGCGGCGGGAGG CCGGGAUG GGUGCAGUGUU       \
                   GGC CCGCCGCCCUCC GGCCCUGC UCACGUUAUAA       C
GGCCAGGGUGGCCGCGUUG^  G            -        -           CCACCCG 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archives.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Star sequence

Tgu-Mir-92-P1d_5p*

mirBase accession

None

Sequence

0- AGGGCCGGGAUGCGGUGCAGUGUU -24

Get sequence

Mature sequence

Tgu-Mir-92-P1d_3p

mirBase accession

None

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

Get sequence