MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-92-P1d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-92-P1a  Cmi-Mir-92-P1b  Cmi-Mir-92-P1c  Cmi-Mir-92-P2a  Cmi-Mir-92-P2b  Cmi-Mir-92-P2c  Cmi-Mir-92-P2d 
Orthologues Ami-Mir-92-P1d  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1d  Cpi-Mir-92-P1d  Cpo-Mir-92-P1d  Dno-Mir-92-P1d  Dre-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1d  Gja-Mir-92-P1d  Hsa-Mir-92-P1d  Isc-Mir-92  Lch-Mir-92-P1d  Loc-Mir-92-P1d  Mal-Mir-92-P1d  Mdo-Mir-92-P1d  Mml-Mir-92-P1d  Mmu-Mir-92-P1d  Mun-Mir-92-P1d  Oan-Mir-92-P1d  Obi-Mir-92  Ocu-Mir-92-P1d  Pbv-Mir-92-P1d  Rno-Mir-92-P1d  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1d  Sto-Mir-92-P1d  Tgu-Mir-92-P1d  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xtr-Mir-92-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI639246.1: 1167-1230 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCCGGGGAGAAGGUUGCGGAGGGCCUGAUGGUGCGGGGGUGAAGUGCAAUGUUGUGACCUGAACGAACAAUAUUGCACUUGUCCCGGCCUCCAGAUCCCCCGCCCUCCAGCGCACCCCGGAA
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Structure
        10          20        30        40        50        60   
GUCCCGGGGAGAAGGUU--|   A  GC   AU   G     GUG            GUGACCU 
                   GCGG GG  CUG  GGU CGGGG   AAGUGCAAUGUU       \
                   CGCC CC  GAC  CCG GCCCU   UUCACGUUAUAA       G
AAGGCCCCACGCGACCUCC^   C  UA   CU   -     G--            CAAGCAA 
  120       110       100        90           80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Star sequence

Cmi-Mir-92-P1d_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGUGCGGGGGUGAAGUGCAAUGUU -25
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Mature sequence

Cmi-Mir-92-P1d_3p
mirBase accessionNone
Sequence 
42- UAUUGCACUUGUCCCGGCCUCC -64
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