MirGeneDB ID | Cmi-Mir-92-P1c |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-92-P1a
Cmi-Mir-92-P1b
Cmi-Mir-92-P1d
Cmi-Mir-92-P2a
Cmi-Mir-92-P2b
Cmi-Mir-92-P2c
Cmi-Mir-92-P2d
|
Orthologues |
Aca-Mir-92-P1c
Ami-Mir-92-P1c
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Bta-Mir-92-P1c
Cel-Mir-92
Cfa-Mir-92-P1c
Cli-Mir-92-P1c
Cpi-Mir-92-P1c
Cpo-Mir-92-P1c
Dno-Mir-92-P1c
Esc-Mir-92
Ete-Mir-92-P1c
Gga-Mir-92-P1c
Gja-Mir-92-P1c
Hsa-Mir-92-P1c
Isc-Mir-92
Mdo-Mir-92-P1c
Mml-Mir-92-P1c
Mmu-Mir-92-P1c
Mun-Mir-92-P1c
Oan-Mir-92-P1c
Obi-Mir-92
Ocu-Mir-92-P1c
Pbv-Mir-92-P1c
Rno-Mir-92-P1c
Sha-Mir-92-P1c
Sme-Mir-92
Spt-Mir-92-P1c
Sto-Mir-92-P1c
Tgu-Mir-92-P1c
Xla-Mir-92-P1c3
Xla-Mir-92-P1c4
Xtr-Mir-92-P1c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635856.1: 9594788-9594849 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCCUUGAGUGAAGAAGGCUGAUUUCUGCAUGGGUGGGGAUUUGUUGCAUUACUGGAUAUUACCGUGACAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAAAAGGAUUCAACAACAAAUAGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCCUUGAGUGAAGAAGG- GA-| G G UU U U GGAUAUU
CU UUUCU CAUGGGU GGGAU GU GCA UACU \
GA AAGGA GUGUCCG CCCUG CA CGU AUGA A
CGAUAAACAACAACUUAG AAA^ G G UU - U CAGUGCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-92-P1c_5p* |
mirBase accession | None |
Sequence |
0- GGGUGGGGAUUUGUUGCAUUACU -23
Get sequence
|
Mature sequence |
Cmi-Mir-92-P1c_3p |
mirBase accession | None |
Sequence |
40- UAUUGCACUUGUCCCGGCCUGU -62
Get sequence
|