MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-92-P1c

Family name MIR-92 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-92-P1a  Cmi-Mir-92-P1b  Cmi-Mir-92-P1d  Cmi-Mir-92-P2a  Cmi-Mir-92-P2b  Cmi-Mir-92-P2c  Cmi-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cja-Mir-92-P1c  Cli-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Eca-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1c  Isc-Mir-92  Laf-Mir-92-P1c  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmr-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Neu-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pab-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635856.1: 9594788-9594849 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)		 Mir-92-P2c KI635856.1: 9594643-9594704 [-] UCSC Ensembl
Mir-92-P1c KI635856.1: 9594788-9594849 [-] UCSC Ensembl
Mir-19-P2c KI635856.1: 9594951-9595013 [-] UCSC Ensembl
Mir-17-P4c KI635856.1: 9595093-9595152 [-] UCSC Ensembl
Mir-19-P1c KI635856.1: 9595282-9595339 [-] UCSC Ensembl
Mir-17-P2c KI635856.1: 9595761-9595825 [-] UCSC Ensembl
Mir-17-P1c KI635856.1: 9595929-9595986 [-] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
GCCUUGAGUGAAGAAGGCUGAUUUCUGCAUGGGUGGGGAUUUGUUGCAUUACUGGAUAUUACCGUGACAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAAAAGGAUUCAACAACAAAUAGC
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Structure
        10         20         30        40        50        60 
GCCUUGAGUGAAGAAGG-  GA-|    G       G     UU  U   U    GGAUAUU 
                  CU   UUUCU CAUGGGU GGGAU  GU GCA UACU       \
                  GA   AAGGA GUGUCCG CCCUG  CA CGU AUGA       A
CGAUAAACAACAACUUAG  AAA^    G       G     UU  -   U    CAGUGCC 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-92-P1c_5p*
mirBase accessionNone
Sequence 
0- GGGUGGGGAUUUGUUGCAUUACU -23
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Mature sequence

Cmi-Mir-92-P1c_3p
mirBase accessionNone
Sequence 
40- UAUUGCACUUGUCCCGGCCUGU -62
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