Mir-92-P1c

MirGeneDB ID

Cfa-Mir-92-P1c

Family name

MIR-92 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-92a-2

Paralogues

Cfa-Mir-92-P1a Cfa-Mir-92-P1d Cfa-Mir-92-P2a Cfa-Mir-92-P2c Cfa-Mir-92-P2d

Orthologues

Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Eca-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gga-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1c Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mml-Mir-92-P1c Mmr-Mir-92-P1c Mmu-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Spt-Mir-92-P1c Sto-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xtr-Mir-92-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chrX: 104895826-104895886 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1c)

Mir-92-P2c chrX: 104895658-104895722 [-] UCSC Ensembl
Mir-92-P1c chrX: 104895826-104895886 [-] UCSC Ensembl
Mir-19-P2c chrX: 104895961-104896026 [-] UCSC Ensembl
Mir-17-P4c chrX: 104896094-104896154 [-] UCSC Ensembl
Mir-17-P2c chrX: 104896344-104896408 [-] UCSC Ensembl
Mir-17-P1c chrX: 104896517-104896575 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

CCUCUUCAGCCUUCAUGCCCAUUCAUCCGCGGGUGGGGAUUUGUGGCAUUACUUGUGUUCCAUAUAAAGUAUUGCACUUGUCCCGGCCUGUGGAAGAAAGGAGGAUUUUAUCGUCUUCUUU

Get precursor sequence

Structure

        10          20        30        40        50        60
CCUCUUCAGCCUUCAUGC--| A   A         G     UU   G  U    UGUGUU 
                    CC UUC UCCGCGGGU GGGAU  GUG CA UACU      C
                    GG AAG AGGUGUCCG CCCUG  CAC GU AUGA      C
UUUCUUCUGCUAUUUUAGGA^ A   A         G     UU   -  U    AAUAUA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-92-P1c_5p*

mirBase accession

None

Sequence

0- GGGUGGGGAUUUGUGGCAUUACU -23

Get sequence

Mature sequence

Cfa-Mir-92-P1c_3p

mirBase accession

MIMAT0006653

Sequence

39- UAUUGCACUUGUCCCGGCCUGU -61

Get sequence

Proposed targets

TargetScanVert: cfa-miR-92a
miRDB: MIMAT0006653