MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-92-P1c4

Family name MIR-92 (all species)
Seed AUUGCAC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-92a-3
Paralogues Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xla-Mir-92-P1c3  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xla-Mir-92-P2a  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xtr-Mir-92-P1c 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030739.1: 74792213-74792274 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c4)
Mir-92-P2c4 NC_030739.1: 74792087-74792151 [-] UCSC Ensembl
Mir-92-P1c4 NC_030739.1: 74792213-74792274 [-] UCSC Ensembl
Mir-17-P2c4 NC_030739.1: 74792615-74792679 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAACCAAGUAUCCAAACUAGCUCCUCUAUGGGUGGGGAUUUGUUGCACGACUUGUGUUUUUAUUAAAAGUAUUGCACUUGUCCCGGCCUGUGGAUGAAAGAUGGACUUUCUGCUUGAGCUC
Get precursor sequence
Structure
        10        20          30        40        50        60 
UGAACCAAGUAUCCAAACUAGC--| C         G     UU  U   CG   UGUGUUU 
                        UC UCUAUGGGU GGGAU  GU GCA  ACU       \
                        AG AGGUGUCCG CCCUG  CA CGU  UGA       U
CUCGAGUUCGUCUUUCAGGUAGAA^ U         G     UU  -   UA   AAAUUAU 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-92-P1c4_5p*

mirBase accessionMIMAT0046609
Sequence
0- GGGUGGGGAUUUGUUGCACGACU -23
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Mature sequence

Xla-Mir-92-P1c4_3p

mirBase accessionMIMAT0011149
Sequence
40- UAUUGCACUUGUCCCGGCCUGU -62
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