MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-17-P2c4

Family name MIR-17 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-18a-2
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xtr-Mir-17-P2c 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030739.1: 74792615-74792679 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c4)		 Mir-92-P2c4 NC_030739.1: 74792087-74792151 [-] UCSC Ensembl
Mir-92-P1c4 NC_030739.1: 74792213-74792274 [-] UCSC Ensembl
Mir-19-P2c4 NC_030739.1: 74792343-74792399 [-] UCSC Ensembl
Mir-17-P4c4 NC_030739.1: 74792455-74792515 [-] UCSC Ensembl
Mir-17-P2c4 NC_030739.1: 74792615-74792679 [-] UCSC Ensembl
Mir-17-P1c4 NC_030739.1: 74792740-74792796 [-] UCSC Ensembl
Seed AAGGUGC
Precursor
(pre-Mir +30nt flank)		 
UUACACCUGAGCUCCAUGGUCUCCCUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGACAUAGCGUAGCAUCUACUGCCCUAAAUGCUCCUUUUGGCACAGGGUGUUCCAUGAUCAUCUCUCAAUCG
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Structure
        10         20         30          40        50        60 
UUACACCUGAGCUCCAU-  UCU-          --|  U    C   U     U  UGACAUA 
                  GG    CCCUGUGUUA  AGG GCAU UAG GCAGU AG       G
                  CC    GGGACACGGU  UCC CGUA AUC CGUCA UC       C
GCUAACUCUCUACUAGUA  UUGU          UU^  U    A   C     -  UACGAUG 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-17-P2c4_5p
mirBase accessionMIMAT0001349
Sequence 
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Co-mature sequence

Xla-Mir-17-P2c4_3p
mirBase accessionMIMAT0046499
Sequence 
41- ACUGCCCUAAAUGCUCCUUUUGGC -65
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