MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-17-P2a3

Family name MIR-17 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cja-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Eca-Mir-17-P2a  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Hsa-Mir-17-P2a  Laf-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmr-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Neu-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pab-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Xtr-Mir-17-P2a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 122721687-122721751 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a3)		 Mir-92-P1a3 NC_030726.1: 122721137-122721196 [-] UCSC Ensembl
Mir-19-P2a3 NC_030726.1: 122721259-122721320 [-] UCSC Ensembl
Mir-17-P4a3 NC_030726.1: 122721387-122721447 [-] UCSC Ensembl
Mir-19-P1a3 NC_030726.1: 122721555-122721612 [-] UCSC Ensembl
Mir-17-P2a3 NC_030726.1: 122721687-122721751 [-] UCSC Ensembl
Mir-17-P1a3 NC_030726.1: 122721820-122721881 [-] UCSC Ensembl
Seed AAGGUGC
Precursor
(pre-Mir +30nt flank)		 
CGAUGUGUCUCUUUAUUGUGCUUUUUGUCCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAACGGCACUUUAUCACUGAACGUUUUU
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Structure
        10          20         30         40        50        60 
CGAUGUGUCUCUUUAUU--     U     -  U-|   U   UC   U    A   UGAAGUA 
                   GUGCU UUUGU CC  AAGG GCA  UAG GCAG UAG       G
                   CACGG AAAUA GG  UUCC CGU  AUC CGUC AUC       A
UUUUUGCAAGUCACUAUUU     C     C  UC^   U   GA   C    -   UACGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-17-P2a3_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Xla-Mir-17-P2a3_3p*
mirBase accessionNone
Sequence 
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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