Mir-17-P2a

MirGeneDB ID

Mmu-Mir-17-P2a

Family name

MIR-17 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-18a

Paralogues

Mmu-Mir-17-P1a Mmu-Mir-17-P1c Mmu-Mir-17-P1d Mmu-Mir-17-P2c Mmu-Mir-17-P4a Mmu-Mir-17-P4c Mmu-Mir-17-P4d

Orthologues

Aca-Mir-17-P2a Ami-Mir-17-P2a Bta-Mir-17-P2a Cfa-Mir-17-P2a Cja-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Eca-Mir-17-P2a Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Hsa-Mir-17-P2a Laf-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mdo-Mir-17-P2a Mml-Mir-17-P2a Mmr-Mir-17-P2a Mun-Mir-17-P2a Neu-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pab-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Sha-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4 Xtr-Mir-17-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr14: 115043867-115043931 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2a)

Mir-17-P1a chr14: 115043684-115043743 [+] UCSC Ensembl
Mir-17-P2a chr14: 115043867-115043931 [+] UCSC Ensembl
Mir-19-P1a chr14: 115044013-115044070 [+] UCSC Ensembl
Mir-17-P4a chr14: 115044183-115044241 [+] UCSC Ensembl
Mir-19-P2a chr14: 115044320-115044380 [+] UCSC Ensembl
Mir-92-P1a chr14: 115044437-115044497 [+] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

GGGCCUGCUGGUGCUGCGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGACUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUCCUCAUCCAAUCCAAG

Get precursor sequence

Structure

        10          20        30          40        50        60 
GGGCCUGCUGGUGCUGCGU--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
GAACCUAACCUACUCCUGUAU         C   CU^  U   GA   C    -   UACGAUC 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-17-P2a_5p

mirBase accession

MIMAT0000528

Sequence

0- UAAGGUGCAUCUAGUGCAGAUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000528
TargetScanVert: mmu-miR-18a-5p
miRDB: MIMAT0000528

Star sequence

Mmu-Mir-17-P2a_3p*

mirBase accession

MIMAT0004626

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

Get sequence

Proposed targets

microrna.org: MIMAT0004626
TargetScanVert: mmu-miR-18a-3p
miRDB: MIMAT0004626