Mir-17-P4a

MirGeneDB ID

Mmu-Mir-17-P4a

Family name

MIR-17 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-20a

Paralogues

Mmu-Mir-17-P1a Mmu-Mir-17-P1c Mmu-Mir-17-P1d Mmu-Mir-17-P2a Mmu-Mir-17-P2c Mmu-Mir-17-P4c Mmu-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr14: 115044183-115044241 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-17-P1a chr14: 115043684-115043743 [+] UCSC Ensembl
Mir-17-P2a chr14: 115043867-115043931 [+] UCSC Ensembl
Mir-19-P1a chr14: 115044013-115044070 [+] UCSC Ensembl
Mir-17-P4a chr14: 115044183-115044241 [+] UCSC Ensembl
Mir-19-P2a chr14: 115044320-115044380 [+] UCSC Ensembl
Mir-92-P1a chr14: 115044437-115044497 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GUGUGUGUGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUGUAGCCAUCUACUGCAUUACGAGCACUUAAAGUACUGCCAGCUGUAGAACUCCAGCCUCGCCU

Get precursor sequence

Structure

        10            20        30         40        50         
GUGUGUGUGAUGUGACA----|  UCU    C   A-       UA        G   UGUGU 
                     GCU   GUAG ACU  AAGUGCU  UAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGA  AUUACGUC AUC     A
UCCGCUCCGACCUCAAGAUGU^  C--    A   AA       GC        -   UACCG 
       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-17-P4a_5p

mirBase accession

MIMAT0000529

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000529
TargetScanVert: mmu-miR-20a-5p
miRDB: MIMAT0000529

Star sequence

Mmu-Mir-17-P4a_3p*

mirBase accession

MIMAT0004627

Sequence

36- ACUGCAUUACGAGCACUUAAAGU -59

Get sequence

Proposed targets

microrna.org: MIMAT0004627
TargetScanVert: mmu-miR-20a-3p
miRDB: MIMAT0004627