Mir-17-P4a2

MirGeneDB ID

Tni-Mir-17-P4a2

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-20

Paralogues

Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Tni-Mir-17-P1d Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Tni-Mir-17-P4a1 Tni-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a2 Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Ocu-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Xtr-Mir-17-P4a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

2: 12892494-12892553 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a2)

Mir-17-P1a2 2: 12891981-12892039 [+] UCSC Ensembl
Mir-17-P4a2 2: 12892494-12892553 [+] UCSC Ensembl
Mir-92-P1a2 2: 12892725-12892783 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCUGACUGGAAGCAGGUUUCAGCAGUAUUAAAGUGCUUAUAGUGCAGGUAGUUUUCUCAGGGUCUACUGCAGUAUGAGCACUUCUAGUACUUCUAGAUGCACCUCUUCUUCUGGAAGA

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Structure

        10         20         30         40        50         
GCUCUGACUGGAAGCAG-  U  -  C       -|          G     G   UUUUC 
                  GU UC AG AGUAUUA AAGUGCUUAUA UGCAG UAG     U
                  CG AG UC UCAUGAU UUCACGAGUAU ACGUC AUC     C
AGAAGGUCUUCUUCUCCA  U  A  U       C^          G     -   UGGGA 
.       110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-17-P4a2_5p

mirBase accession

MIMAT0003084

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

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Star sequence

Tni-Mir-17-P4a2_3p*

mirBase accession

None

Sequence

37- ACUGCAGUAUGAGCACUUCUAGU -60

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