Mir-17-P4a

MirGeneDB ID

Mml-Mir-17-P4a

Family name

MIR-17 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-20a

Paralogues

Mml-Mir-17-P1a Mml-Mir-17-P1c Mml-Mir-17-P1d Mml-Mir-17-P2a Mml-Mir-17-P2c Mml-Mir-17-P4c Mml-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014352.1: 73152580-73152638 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-17-P1a CM014352.1: 73152126-73152185 [+] UCSC Ensembl
Mir-17-P2a CM014352.1: 73152264-73152328 [+] UCSC Ensembl
Mir-19-P1a CM014352.1: 73152412-73152469 [+] UCSC Ensembl
Mir-17-P4a CM014352.1: 73152580-73152638 [+] UCSC Ensembl
Mir-19-P2a CM014352.1: 73152715-73152775 [+] UCSC Ensembl
Mir-92-P1a CM014352.1: 73152832-73152890 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GUGUAUCUGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUCCAGCUUCGGCC

Get precursor sequence

Structure

        10            20        30         40        50         
GUGUAUCUGAUGUGACA----|  UCU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
CCGGCUUCGACCUCAAGAUGU^  U--    A   AA                 -   UAUUG 
       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-17-P4a_5p

mirBase accession

MIMAT0002704

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-20a-5p

Star sequence

Mml-Mir-17-P4a_3p*

mirBase accession

MIMAT0026597

Sequence

36- ACUGCAUUAUGAGCACUUAAAGU -59

Get sequence

Proposed targets

TargetScanVert: mml-miR-20a-3p