MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-17-P4a

Family name MIR-17 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-17-P1a  Pab-Mir-17-P1c  Pab-Mir-17-P1d  Pab-Mir-17-P2a  Pab-Mir-17-P2c  Pab-Mir-17-P4c  Pab-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054693.2: 97462740-97462798 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)
Mir-17-P1a CM054693.2: 97462286-97462345 [+] UCSC Ensembl
Mir-17-P2a CM054693.2: 97462424-97462488 [+] UCSC Ensembl
Mir-19-P1a CM054693.2: 97462572-97462629 [+] UCSC Ensembl
Mir-17-P4a CM054693.2: 97462740-97462798 [+] UCSC Ensembl
Mir-19-P2a CM054693.2: 97462875-97462935 [+] UCSC Ensembl
Mir-92-P1a CM054693.2: 97462992-97463050 [+] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)
GUGUAUCUGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUCCAGCUUCGGCC
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Structure
        10            20        30         40        50         
GUGUAUCUGAUGUGACA----|  UCU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
CCGGCUUCGACCUCAAGAUGU^  U--    A   AA                 -   UAUUG 
       110       100          90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Li Li
Mature sequence

Pab-Mir-17-P4a_5p

mirBase accessionNone
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Pab-Mir-17-P4a_3p* (predicted)

mirBase accessionNone
Sequence
36- ACUGCAUUAUGAGCACUUAAAGU -59
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