Mir-17-P4a1

MirGeneDB ID

Dre-Mir-17-P4a1

Family name

MIR-17 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-20a

Paralogues

Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Dre-Mir-17-P2c Dre-Mir-17-P4a2 Dre-Mir-17-P4c Dre-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Xtr-Mir-17-P4a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr1: 3297646-3297705 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a1)

Mir-92-P1a1 chr1: 3297377-3297435 [-] UCSC Ensembl
Mir-19-P2a1 chr1: 3297494-3297555 [-] UCSC Ensembl
Mir-17-P4a1 chr1: 3297646-3297705 [-] UCSC Ensembl
Mir-19-P1a1 chr1: 3297862-3297919 [-] UCSC Ensembl
Mir-17-P2a1 chr1: 3298014-3298078 [-] UCSC Ensembl
Mir-17-P1a1 chr1: 3298149-3298209 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GUUGCAGUUGUGUUAGAGUUUCAGCAGUGCUAAAGUGCUUAUAGUGCAGGUAGUAUUUCUGUCAUCUACUGCAGUGUGAGCACUUGAAGUACUUCUAGCUUAAUGCGUCUGGGAUCCGAA

Get precursor sequence

Structure

        10            20        30         40        50         
GUUGCAGUUGUGUUAGA----|  UC  C      A-           G     G   UAUUU 
                     GUU  AG AGUGCU  AAGUGCUUAUA UGCAG UAG     C
                     CGA  UC UCAUGA  UUCACGAGUGU ACGUC AUC     U
AAGCCUAGGGUCUGCGUAAUU^  --  U      AG           G     -   UACUG 
.       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-17-P4a1_5p

mirBase accession

MIMAT0001786

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-20a

Star sequence

Dre-Mir-17-P4a1_3p*

mirBase accession

MIMAT0003400

Sequence

37- ACUGCAGUGUGAGCACUUGAAGU -60

Get sequence