| MirGeneDB ID | Lch-Mir-17-P4a |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-17-P1a Lch-Mir-17-P1c Lch-Mir-17-P1d Lch-Mir-17-P2a Lch-Mir-17-P2c Lch-Mir-17-P4c Lch-Mir-17-P4d |
| Orthologues | Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH129267.1: 172558-172616 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P4a) |
Mir-92-P1a
JH129267.1: 172327-172385 [-]
Ensembl
Mir-19-P2a JH129267.1: 172435-172498 [-] Ensembl Mir-17-P4a JH129267.1: 172558-172616 [-] Ensembl Mir-19-P1a JH129267.1: 172741-172798 [-] Ensembl Mir-17-P2a JH129267.1: 172869-172933 [-] Ensembl Mir-17-P1a JH129267.1: 173002-173062 [-] Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
CAUUGGCAUGGAUAUGAGCUUUAGCAGCGCUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUAAUCUACUGCAUUGUGAGCACUUAAAGUUCUGCUAGCUAGUGGGCAUCAACUUGGAAAGet precursor sequence |
| Structure | 10 20 30 40 50 CAUUGGCAUGGAUAUGA----| UU C A- G UGUUU GCU AGCAG GCU AAGUGCUUAUAGUGCAG UAG \ CGA UCGUC UGA UUCACGAGUGUUACGUC AUC A AAAGGUUCAACUACGGGUGAU^ -- U AA - UAAUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-17-P4a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Lch-Mir-17-P4a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- ACUGCAUUGUGAGCACUUAAAGU -59
Get sequence
|
