MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-17-P4a3

Family name MIR-17 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-20a
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Xtr-Mir-17-P4a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 122721387-122721447 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a3)		 Mir-92-P1a3 NC_030726.1: 122721137-122721196 [-] UCSC Ensembl
Mir-19-P2a3 NC_030726.1: 122721259-122721320 [-] UCSC Ensembl
Mir-17-P4a3 NC_030726.1: 122721387-122721447 [-] UCSC Ensembl
Mir-19-P1a3 NC_030726.1: 122721555-122721612 [-] UCSC Ensembl
Mir-17-P2a3 NC_030726.1: 122721687-122721751 [-] UCSC Ensembl
Mir-17-P1a3 NC_030726.1: 122721820-122721881 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
AUACAAGCACCAAUUUGGCUAAAGUUGUGCUAAAGUGCUUAUAGUGCAGGUAGUUUUUUGUGUAUUCUACUGCAUUAAGAGCACUUAAAGUACUUCUAGCUGCAUAUCUACGCAACCCAUC
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Structure
        10            20        30         40        50          
AUACAAGCACCAAUUUG----|   AAGUU     A-        A        G   UUUUUU 
                     GCUA     GUGCU  AAGUGCUU UAGUGCAG UAG      \
                     CGAU     CAUGA  UUCACGAG AUUACGUC AUC      G
CUACCCAACGCAUCUAUACGU^   CUU--     AA        A        -   UUAUGU 
 .       110       100          90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-17-P4a3_5p
mirBase accessionMIMAT0046528
Sequence 
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Xla-Mir-17-P4a3_3p*
mirBase accessionMIMAT0046529
Sequence 
38- ACUGCAUUAAGAGCACUUAAAGU -61
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