Mir-92-P1a3

MirGeneDB ID

Xla-Mir-92-P1a3

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-92a-1

Paralogues

Xla-Mir-92-P1a4 Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xla-Mir-92-P2a Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xla-Mir-92-P2d3 Xla-Mir-92-P2d4

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Hsa-Mir-92-P1a Isc-Mir-92 Lch-Mir-92-P1a Loc-Mir-92-P1a Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Obi-Mir-92 Ocu-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Xtr-Mir-92-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 122721137-122721196 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a3)

Mir-92-P1a3 NC_030726.1: 122721137-122721196 [-] UCSC Ensembl
Mir-17-P4a3 NC_030726.1: 122721387-122721447 [-] UCSC Ensembl
Mir-19-P1a3 NC_030726.1: 122721555-122721612 [-] UCSC Ensembl
Mir-17-P1a3 NC_030726.1: 122721820-122721881 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGAUAGUGGGGACUUGCCCCUUUCUGUAUAGGUUGGGAUUGGUUGCAAUGCUGUACUAUUUAUGUAGUAUUGCACUUGUCCCGGCCUGUUUAGGAUGGUUGGGAUUUUCCAAUGGUUUG

Get precursor sequence

Structure

        10          20        30        40        50          
GGGAUAGUGGGGACUUGCC--| U     U            U   U        GUACUA 
                     CC UUCUG AUAGGUUGGGAU GGU GCAAUGCU      \
                     GG AGGAU UGUCCGGCCCUG UCA CGUUAUGA      U
GUUUGGUAACCUUUUAGGGUU^ U     U            U   -        UGUAUU 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-92-P1a3_5p*

mirBase accession

None

Sequence

0- AGGUUGGGAUUGGUUGCAAUGCU -23

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Mature sequence

Xla-Mir-92-P1a3_3p

mirBase accession

MIMAT0011149

Sequence

38- UAUUGCACUUGUCCCGGCCUGU -60

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