MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-92-P1a3

Family name MIR-92 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-92a-1
Paralogues Xla-Mir-92-P1a4  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xla-Mir-92-P2a  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cja-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Eca-Mir-92-P1a  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1a  Isc-Mir-92  Laf-Mir-92-P1a  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmr-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Obi-Mir-92  Ocu-Mir-92-P1a  Pab-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Xtr-Mir-92-P1a 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 122721137-122721196 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a3)		 Mir-92-P1a3 NC_030726.1: 122721137-122721196 [-] UCSC Ensembl
Mir-19-P2a3 NC_030726.1: 122721259-122721320 [-] UCSC Ensembl
Mir-17-P4a3 NC_030726.1: 122721387-122721447 [-] UCSC Ensembl
Mir-19-P1a3 NC_030726.1: 122721555-122721612 [-] UCSC Ensembl
Mir-17-P2a3 NC_030726.1: 122721687-122721751 [-] UCSC Ensembl
Mir-17-P1a3 NC_030726.1: 122721820-122721881 [-] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
GGGAUAGUGGGGACUUGCCCCUUUCUGUAUAGGUUGGGAUUGGUUGCAAUGCUGUACUAUUUAUGUAGUAUUGCACUUGUCCCGGCCUGUUUAGGAUGGUUGGGAUUUUCCAAUGGUUUG
Get precursor sequence
Structure
        10          20        30        40        50          
GGGAUAGUGGGGACUUGCC--| U     U            U   U        GUACUA 
                     CC UUCUG AUAGGUUGGGAU GGU GCAAUGCU      \
                     GG AGGAU UGUCCGGCCCUG UCA CGUUAUGA      U
GUUUGGUAACCUUUUAGGGUU^ U     U            U   -        UGUAUU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-92-P1a3_5p*
mirBase accessionNone
Sequence 
0- AGGUUGGGAUUGGUUGCAAUGCU -23
Get sequence
Mature sequence

Xla-Mir-92-P1a3_3p
mirBase accessionMIMAT0011149
Sequence 
38- UAUUGCACUUGUCCCGGCCUGU -60
Get sequence