Mir-92-P1a

MirGeneDB ID

Gja-Mir-92-P1a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-92-P1c Gja-Mir-92-P1d Gja-Mir-92-P2a Gja-Mir-92-P2c

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Hsa-Mir-92-P1a Isc-Mir-92 Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015159750.1: 119406-119466 [-]

Precursor
(pre-Mir +30nt flank)

AUAAGAGCUAAACUGUACCCCUUUCUAAACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUUUGUCUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGCUAGAACGUGGAACAU

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Structure

        10          20        30        40        50        60
AUAAGAGCUAAACUGUA-  -| UU   A             C   U        GUGUGU 
                  CC CC  UCU AACAGGUUGGGAU AGU GCAAUGCU      U
                  GG GG  GGA UUGUCCGGCCCUG UCA CGUUAUGG      U
UACAAGGUGCAAGAUCGG  U^ UU   G             U   -        UGUCUG 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Star sequence

Gja-Mir-92-P1a_5p*

mirBase accession

None

Sequence

0- AGGUUGGGAUCAGUUGCAAUGCU -23

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Mature sequence

Gja-Mir-92-P1a_3p

mirBase accession

None

Sequence

39- UAUUGCACUUGUCCCGGCCUGU -61

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