MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-92a-1
Paralogues Pbv-Mir-92-P1c  Pbv-Mir-92-P1d  Pbv-Mir-92-P2c 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE958468.1: 77465-77524 [-]
Clustered miRNAs
(< 50kb from Mir-92-P1a)
Mir-92-P1a KE958468.1: 77465-77524 [-]
Mir-19-P2a KE958468.1: 77578-77638 [-]
Mir-17-P4a KE958468.1: 77721-77779 [-]
Mir-19-P1a KE958468.1: 77871-77928 [-]
Mir-17-P2a KE958468.1: 78002-78066 [-]
Mir-17-P1a KE958468.1: 78143-78203 [-]
Precursor
(pre-Mir +30nt flank)
AUGUAUGAUAAGUUGUACCCCUUUCUACACAGGUUGGGAUCGGUUGCAAUGCUGUGUUGAGUCUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGCAAGAAUCUGCAGCAA
Get precursor sequence
Structure
        10          20        30        40        50          
AUGUAUGAUAAGUUGUA-  -| UU   AC            C   U        GUGUUG 
                  CC CC  UCU  ACAGGUUGGGAU GGU GCAAUGCU      \
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGG      A
AACGACGUCUAAGAACGG  U^ UU   GU            U   -        UGUCUG 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Star sequence

Pbv-Mir-92-P1a_5p*

mirBase accessionNone
Sequence
0- AGGUUGGGAUCGGUUGCAAUGCU -23
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Mature sequence

Pbv-Mir-92-P1a_3p

mirBase accessionMIMAT0038889
Sequence
38- UAUUGCACUUGUCCCGGCCUGU -60
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