Mir-92-P1a

MirGeneDB ID

Cpi-Mir-92-P1a

Family name

MIR-92 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-92a-1

Paralogues

Cpi-Mir-92-P1c Cpi-Mir-92-P1d Cpi-Mir-92-P2a Cpi-Mir-92-P2c

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584859: 1459222-1459280 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-92-P1a JH584859: 1459222-1459280 [-] UCSC Ensembl
Mir-19-P2a JH584859: 1459336-1459396 [-] UCSC Ensembl
Mir-17-P4a JH584859: 1459480-1459538 [-] UCSC Ensembl
Mir-19-P1a JH584859: 1459662-1459719 [-] UCSC Ensembl
Mir-17-P2a JH584859: 1459801-1459865 [-] UCSC Ensembl
Mir-17-P1a JH584859: 1459949-1460008 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

AAGUGAGGAAAGUUGUACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUGCCUGUAGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGACAGAGGCUGCAACAU

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Structure

        10          20        30        40        50         
AAGUGAGGAAAGUUGUA-  -| UU   AC            C   U        GUGUG 
                  CC CC  UCU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGA     G
UACAACGUCGGAGACAGG  U^ UU   GU            U   -        UGUCC 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Te	Te	Te	To

Star sequence

Cpi-Mir-92-P1a_5p*

mirBase accession

MIMAT0037698

Sequence

0- AGGUUGGGAUCAGUUGCAAUGCU -23

Get sequence

Mature sequence

Cpi-Mir-92-P1a_3p

mirBase accession

MIMAT0037699

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

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