MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-92-P1a

Family name MIR-92 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-92-P1b  Cmi-Mir-92-P1c  Cmi-Mir-92-P1d  Cmi-Mir-92-P2a  Cmi-Mir-92-P2b  Cmi-Mir-92-P2c  Cmi-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cja-Mir-92-P1a  Cli-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Eca-Mir-92-P1a  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1a  Isc-Mir-92  Laf-Mir-92-P1a  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmr-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pab-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635908.1: 307621-307678 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a)		 Mir-17-P1a KI635908.1: 306927-306985 [+] UCSC Ensembl
Mir-17-P2a KI635908.1: 307076-307140 [+] UCSC Ensembl
Mir-19-P1a-v1 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-19-P1a-v2 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-17-P4a KI635908.1: 307386-307446 [+] UCSC Ensembl
Mir-19-P2a KI635908.1: 307499-307558 [+] UCSC Ensembl
Mir-92-P1a KI635908.1: 307621-307678 [+] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
CAGUCCUUCAAAUGCAUCCCCUUUCUGCACCGGUUGGGAUUUGUUGCAAUGCUGAUAAAUGCAUGGUAUUGCACUUGUCCCGGCCUGUUAAGGAUAGUGGGCCUGCAGAUCAAAAGGA
Get precursor sequence
Structure
        10        20          30        40        50         
CAGUCCUUCAAAUGCAUC  -  U   GC-| C         UU  U        GAUAA 
                  CC CU UCU   AC GGUUGGGAU  GU GCAAUGCU     \
                  GG GA AGG   UG CCGGCCCUG  CA CGUUAUGG     A
AGGAAAACUAGACGUCCG  U  U   AAU^ U         UU  -        UACGU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-92-P1a_5p*
mirBase accessionNone
Sequence 
0- CGGUUGGGAUUUGUUGCAAUGCU -23
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Mature sequence

Cmi-Mir-92-P1a_3p
mirBase accessionNone
Sequence 
36- UAUUGCACUUGUCCCGGCCUGU -58
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