MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1b  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635908.1: 306927-306985 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGUACCUGAAAUGUGUCAAAAUUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGUCUUAAAAUCUACUGCAGUGAAGGCACUUCAAGCAUUAUAUUGACAAUACUGUCCAGUAAUUCU
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Structure
        10           20        30         40        50         
CCAGUACCUGAAAUGUG---|   AAU      CA-        A  G     G   UGUCU 
                    UCAA   UAAUGU   AAGUGCUU CA UGCAG UAG     \
                    AGUU   AUUACG   UUCACGGA GU ACGUC AUC     U
UCUUAAUGACCUGUCAUAAC^   AU-      AAC        A  G     -   UAAAA 
       110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P1a_5p

mirBase accessionNone
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Cmi-Mir-17-P1a_3p*

mirBase accessionNone
Sequence
36- ACUGCAGUGAAGGCACUUCAAGC -59
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