MirGeneDB ID | Cmi-Mir-17-P1a |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-17-P1b
Cmi-Mir-17-P1c
Cmi-Mir-17-P1d
Cmi-Mir-17-P2a
Cmi-Mir-17-P2c
Cmi-Mir-17-P3b
Cmi-Mir-17-P4a
Cmi-Mir-17-P4b
Cmi-Mir-17-P4c
Cmi-Mir-17-P4d
|
Orthologues |
Aca-Mir-17-P1a
Ami-Mir-17-P1a
Bta-Mir-17-P1a
Cfa-Mir-17-P1a
Cli-Mir-17-P1a
Cpi-Mir-17-P1a
Cpo-Mir-17-P1a
Dno-Mir-17-P1a
Dre-Mir-17-P1a1
Dre-Mir-17-P1a2
Ete-Mir-17-P1a
Gga-Mir-17-P1a
Gja-Mir-17-P1a
Gmo-Mir-17-P1a1
Gmo-Mir-17-P1a2
Hsa-Mir-17-P1a
Lch-Mir-17-P1a
Loc-Mir-17-P1a
Mal-Mir-17-P1a1
Mal-Mir-17-P1a2
Mdo-Mir-17-P1a
Mml-Mir-17-P1a
Mmu-Mir-17-P1a
Mun-Mir-17-P1a
Oan-Mir-17-P1a
Ocu-Mir-17-P1a
Pbv-Mir-17-P1a
Rno-Mir-17-P1a
Sha-Mir-17-P1a
Spt-Mir-17-P1a
Sto-Mir-17-P1a
Tgu-Mir-17-P1a
Tni-Mir-17-P1a1
Tni-Mir-17-P1a2
Xla-Mir-17-P1a3
Xla-Mir-17-P1a4
Xtr-Mir-17-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635908.1: 306927-306985 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAGUACCUGAAAUGUGUCAAAAUUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGUCUUAAAAUCUACUGCAGUGAAGGCACUUCAAGCAUUAUAUUGACAAUACUGUCCAGUAAUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCAGUACCUGAAAUGUG---| AAU CA- A G G UGUCU
UCAA UAAUGU AAGUGCUU CA UGCAG UAG \
AGUU AUUACG UUCACGGA GU ACGUC AUC U
UCUUAAUGACCUGUCAUAAC^ AU- AAC A G - UAAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-17-P1a_5p |
mirBase accession | None |
Sequence |
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Cmi-Mir-17-P1a_3p* |
mirBase accession | None |
Sequence |
36- ACUGCAGUGAAGGCACUUCAAGC -59
Get sequence
|