Mir-17-P1a

MirGeneDB ID

Cmi-Mir-17-P1a

Family name

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-17-P1b Cmi-Mir-17-P1c Cmi-Mir-17-P1d Cmi-Mir-17-P2a Cmi-Mir-17-P2c Cmi-Mir-17-P3b Cmi-Mir-17-P4a Cmi-Mir-17-P4b Cmi-Mir-17-P4c Cmi-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Gmo-Mir-17-P1a2 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a1 Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Xla-Mir-17-P1a3 Xla-Mir-17-P1a4 Xtr-Mir-17-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635908.1: 306927-306985 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a)

Mir-17-P1a KI635908.1: 306927-306985 [+] UCSC Ensembl
Mir-17-P2a KI635908.1: 307076-307140 [+] UCSC Ensembl
Mir-19-P1a-v1 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-19-P1a-v2 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-17-P4a KI635908.1: 307386-307446 [+] UCSC Ensembl
Mir-19-P2a KI635908.1: 307499-307558 [+] UCSC Ensembl
Mir-92-P1a KI635908.1: 307621-307678 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

CCAGUACCUGAAAUGUGUCAAAAUUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGUCUUAAAAUCUACUGCAGUGAAGGCACUUCAAGCAUUAUAUUGACAAUACUGUCCAGUAAUUCU

Get precursor sequence

Structure

        10           20        30         40        50         
CCAGUACCUGAAAUGUG---|   AAU      CA-        A  G     G   UGUCU 
                    UCAA   UAAUGU   AAGUGCUU CA UGCAG UAG     \
                    AGUU   AUUACG   UUCACGGA GU ACGUC AUC     U
UCUUAAUGACCUGUCAUAAC^   AU-      AAC        A  G     -   UAAAA 
       110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-17-P1a_5p

mirBase accession

None

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Star sequence

Cmi-Mir-17-P1a_3p*

mirBase accession

None

Sequence

36- ACUGCAGUGAAGGCACUUCAAGC -59

Get sequence