MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-17-P1a1

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-17-1
Paralogues Gmo-Mir-17-P1a2  Gmo-Mir-17-P1d  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Gmo-Mir-17-P2c  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Gmo-Mir-17-P4c  Gmo-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Xtr-Mir-17-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_520: 24224-24283 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a1)
Mir-17-P1a1 GeneScaffold_520: 24224-24283 [+] UCSC Ensembl
Mir-17-P2a1 GeneScaffold_520: 24343-24407 [+] UCSC Ensembl
Mir-19-P1a1 GeneScaffold_520: 24486-24543 [+] UCSC Ensembl
Mir-17-P4a1 GeneScaffold_520: 24648-24707 [+] UCSC Ensembl
Mir-19-P2a1 GeneScaffold_520: 24765-24825 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUGAAGACUGCUACUGCCUGGGUAUUGCCAAAGUGCUUACAGUGCAGGUAGUACUAUGCAACGCUACUGCAGUGGAGGCACUUCUAGCAAUACCCGGGCCCGGGCUCCCACGCUCCUG
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Structure
        10          20        30         40        50         
AGCUGAAGACUGCUACU--             CA-|       A  G     G   UACUA 
                   GCCUGGGUAUUGC   AAGUGCUU CA UGCAG UAG     U
                   CGGGCCCAUAACG   UUCACGGA GU ACGUC AUC     G
GUCCUCGCACCCUCGGGCC             AUC^       G  G     -   GCAAC 
.       110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-17-P1a1_5p

mirBase accessionMIMAT0044301
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Gmo-Mir-17-P1a1_3p*

mirBase accessionNone
Sequence
37- ACUGCAGUGGAGGCACUUCUAGC -60
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