MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-17-P1a

Family name MIR-17 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-17
Paralogues Gga-Mir-17-P1c  Gga-Mir-17-P2a  Gga-Mir-17-P2c  Gga-Mir-17-P4a  Gga-Mir-17-P4c 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 1: 149440570-149440630 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a)		 Mir-92-P1a 1: 149439857-149439915 [-] UCSC Ensembl
Mir-19-P2a 1: 149439972-149440032 [-] UCSC Ensembl
Mir-17-P4a 1: 149440105-149440163 [-] UCSC Ensembl
Mir-19-P1a 1: 149440280-149440337 [-] UCSC Ensembl
Mir-17-P2a 1: 149440419-149440483 [-] UCSC Ensembl
Mir-17-P1a 1: 149440570-149440630 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
CUAAAAAAGCUGGUUGCGUCAGAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUAUAGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUGUUGACAGCUGCCUCAGGAGAUCUU
Get precursor sequence
Structure
        10          20        30         40        50          
CUAAAAAAGCUGGUUGC--     A       CA-|       A  G     G   UGAUAU 
                   GUCAG GUAAUGU   AAGUGCUU CA UGCAG UAG      \
                   CAGUU UAUUACG   UUCACGGA GU ACGUC AUC      A
UUCUAGAGGACUCCGUCGA     G       AUG^       A  G     -   CAAGAU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-17-P1a_5p
mirBase accessionMIMAT0001114
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Proposed targets TargetScanVert: gga-miR-17-5p
miRDB: MIMAT0001114
Star sequence

Gga-Mir-17-P1a_3p*
mirBase accessionMIMAT0001115
Sequence 
38- ACUGCAGUGAAGGCACUUGUAGC -61
Get sequence
Proposed targets TargetScanVert: gga-miR-17-3p
miRDB: MIMAT0001115