Mir-17-P1a4

MirGeneDB ID

Xla-Mir-17-P1a4

Family name

MIR-17 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-17-1

Paralogues

Xla-Mir-17-P1a3 Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4 Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xla-Mir-17-P4d3 Xla-Mir-17-P4d4

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Xtr-Mir-17-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 104999384-104999445 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a4)

Mir-92-P1a4 NC_030727.1: 104998709-104998768 [-] UCSC Ensembl
Mir-19-P2a4 NC_030727.1: 104998831-104998891 [-] UCSC Ensembl
Mir-17-P4a4 NC_030727.1: 104998958-104999018 [-] UCSC Ensembl
Mir-19-P1a4 NC_030727.1: 104999128-104999185 [-] UCSC Ensembl
Mir-17-P2a4 NC_030727.1: 104999254-104999318 [-] UCSC Ensembl
Mir-17-P1a4 NC_030727.1: 104999384-104999445 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GCUGGGUCCAGCAGUUGUCAAGAGUAGUGUCAAAGUGCUUACAGUGCAGGUAGUGAUUUAACAGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUGUUGACAGUGUUUACUCGCUGCUAA

Get precursor sequence

Structure

        10           20        30         40        50        60
GCUGGGUCCAGCAGUUG---|   GA       CA-        A  G     G   UGAUUU 
                    UCAA  GUAGUGU   AAGUGCUU CA UGCAG UAG      A
                    AGUU  UAUUACG   UUCACGGA GU ACGUC AUC      A
AAUCGUCGCUCAUUUGUGAC^   G-       AUG        A  G     -   CAAGAC 
120       110       100         90        80         70