MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-17-P4a4

Family name MIR-17 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Xtr-Mir-17-P4a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 104998958-104999018 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a4)		 Mir-92-P1a4 NC_030727.1: 104998709-104998768 [-] UCSC Ensembl
Mir-19-P2a4 NC_030727.1: 104998831-104998891 [-] UCSC Ensembl
Mir-17-P4a4 NC_030727.1: 104998958-104999018 [-] UCSC Ensembl
Mir-19-P1a4 NC_030727.1: 104999128-104999185 [-] UCSC Ensembl
Mir-17-P2a4 NC_030727.1: 104999254-104999318 [-] UCSC Ensembl
Mir-17-P1a4 NC_030727.1: 104999384-104999445 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
AUACAAGCACCAAUUUGGCUAAUGUGGUGCUAAAGUGCUUAUAGUGCAGGUAGUUGUUUGUGUAUUCUACUGCAUUAUGAGCACUUAAAGUACUUCUAGCUGCAUAUCUGUGCAACCCGUC
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Structure
        10            20        30         40        50          
AUACAAGCACCAAUUUG----|   AUGU      A-                 G   UUGUUU 
                     GCUA    GGUGCU  AAGUGCUUAUAGUGCAG UAG      \
                     CGAU    UCAUGA  UUCACGAGUAUUACGUC AUC      G
CUGCCCAACGUGUCUAUACGU^   CU--      AA                 -   UUAUGU 
 .       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-17-P4a4_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Xla-Mir-17-P4a4_3p* (predicted)
mirBase accessionNone
Sequence 
38- ACUGCAUUAUGAGCACUUAAAGU -61
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