Mir-17-P4a

MirGeneDB ID

Rno-Mir-17-P4a

Family name

MIR-17 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-20a

Paralogues

Rno-Mir-17-P1a Rno-Mir-17-P1c Rno-Mir-17-P1d Rno-Mir-17-P2a Rno-Mir-17-P2c Rno-Mir-17-P4c Rno-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr15: 100180349-100180407 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-17-P1a chr15: 100179892-100179951 [+] UCSC Ensembl
Mir-17-P2a chr15: 100180031-100180095 [+] UCSC Ensembl
Mir-19-P1a chr15: 100180175-100180232 [+] UCSC Ensembl
Mir-17-P4a chr15: 100180349-100180407 [+] UCSC Ensembl
Mir-19-P2a chr15: 100180479-100180539 [+] UCSC Ensembl
Mir-92-P1a chr15: 100180596-100180654 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

CGGUGUGUGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUGUCGUCAUCUACUGCAUUACGAGCACUUACAGUACUGCCAGCUGUAAGCUCCAGCCUCGGCCC

Get precursor sequence

Structure

        10            20        30         40        50         
CGGUGUGUGAUGUGACA----|  UCU    C   A-       UA        G   UGUGU 
                     GCU   GUAG ACU  AAGUGCU  UAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGA  AUUACGUC AUC     C
CCCGGCUCCGACCUCGAAUGU^  C--    A   CA       GC        -   UACUG 
       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-17-P4a_5p

mirBase accession

MIMAT0000602

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000602
TargetScanVert: rno-miR-20a-5p
miRDB: MIMAT0000602

Star sequence

Rno-Mir-17-P4a_3p*

mirBase accession

MIMAT0000603

Sequence

36- ACUGCAUUACGAGCACUUACAGU -59

Get sequence

Proposed targets

microrna.org: MIMAT0000603
TargetScanVert: rno-miR-20a-3p
miRDB: MIMAT0000603