MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-17-P1d

Family name MIR-17 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-106b
Paralogues Rno-Mir-17-P1a  Rno-Mir-17-P1c  Rno-Mir-17-P2a  Rno-Mir-17-P2c  Rno-Mir-17-P4a  Rno-Mir-17-P4c  Rno-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr12: 19307761-19307822 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-92-P2d chr12: 19307351-19307410 [-] UCSC Ensembl
Mir-17-P4d chr12: 19307555-19307615 [-] UCSC Ensembl
Mir-17-P1d chr12: 19307761-19307822 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
CUUCUUCCCUCCCACCAGCCCUGCUGGGACUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCUGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACAUGCAACACCCACGGAG
Get precursor sequence
Structure
        10          20         30        40        50          
CUUCUUCCCUCCCACCA--          -|ACUA       G       AGAUAGUGGUCC 
                   GCCCUGCUGG G    AAGUGCU ACAGUGC            \
                   CGGGACGACC C    UUCAUGG UGUCACG            U
GAGGCACCCACAACGUACA          U^GUCG       G       CCAUCGUGUCUC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts +1 and +2.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-17-P1d_5p
mirBase accessionMIMAT0000825
Sequence 
0- UAAAGUGCUGACAGUGCAGAUA -22
Get sequence
Proposed targets microrna.org: MIMAT0000825
TargetScanVert: rno-miR-106b-5p
miRDB: MIMAT0000825
Star sequence

Rno-Mir-17-P1d_3p*
mirBase accessionMIMAT0004727
Sequence 
40- CCGCACUGUGGGUACUUGCUGC -62
Get sequence
Proposed targets microrna.org: MIMAT0004727
TargetScanVert: rno-miR-106b-3p
miRDB: MIMAT0004727