Mir-17-P4c

MirGeneDB ID

Rno-Mir-17-P4c

Family name

MIR-17 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-20b

Paralogues

Rno-Mir-17-P1a Rno-Mir-17-P1c Rno-Mir-17-P1d Rno-Mir-17-P2a Rno-Mir-17-P2c Rno-Mir-17-P4a Rno-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chrX: 140117522-140117582 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c chrX: 140117108-140117172 [-] UCSC Ensembl
Mir-92-P1c chrX: 140117265-140117325 [-] UCSC Ensembl
Mir-19-P2c chrX: 140117391-140117456 [-] UCSC Ensembl
Mir-17-P4c chrX: 140117522-140117582 [-] UCSC Ensembl
Mir-17-P2c chrX: 140117734-140117798 [-] UCSC Ensembl
Mir-17-P1c chrX: 140117900-140117958 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

UACAAGGACAAGCUCCGAUCCUAGUAGUGCCAAAGUGCUCAUAGUGCAGGUAGGUUUUGCUGCACUCUACUGCAGUGUGAGCACUUCUGGUACUCUUCGAAUCAACCAAACCCUCGUUGAC

Get precursor sequence

Structure

        10           20        30         40        50          
UACAAGGACAAGCUCCGA---| CU  U       -           G     G   GUUUUG 
                     UC  AG AGUGCCA AAGUGCUCAUA UGCAG UAG      \
                     AG  UC UCAUGGU UUCACGAGUGU ACGUC AUC      C
CAGUUGCUCCCAAACCAACUA^ CU  -       C           G     -   UCACGU 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-17-P4c_5p

mirBase accession

MIMAT0003211

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0003211
TargetScanVert: rno-miR-20b-5p
miRDB: MIMAT0003211

Star sequence

Rno-Mir-17-P4c_3p*

mirBase accession

MIMAT0003212

Sequence

38- ACUGCAGUGUGAGCACUUCUGGU -61

Get sequence

Proposed targets

microrna.org: MIMAT0003212
TargetScanVert: rno-miR-20b-3p
miRDB: MIMAT0003212