Mir-92-P2c

MirGeneDB ID

Rno-Mir-92-P2c

Family name

MIR-92 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-363

Paralogues

Rno-Mir-92-P1a Rno-Mir-92-P1c Rno-Mir-92-P1d Rno-Mir-92-P2a Rno-Mir-92-P2d

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cja-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chrX: 140117108-140117172 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2c)

Mir-92-P2c chrX: 140117108-140117172 [-] UCSC Ensembl
Mir-92-P1c chrX: 140117265-140117325 [-] UCSC Ensembl
Mir-19-P2c chrX: 140117391-140117456 [-] UCSC Ensembl
Mir-17-P4c chrX: 140117522-140117582 [-] UCSC Ensembl
Mir-17-P2c chrX: 140117734-140117798 [-] UCSC Ensembl
Mir-17-P1c chrX: 140117900-140117958 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

UAAUUAUGAAAUGAACUGUUUUGCUGUUAUCGGGUGGAUCACGAUGCAAUUUUGAUUAGAGUAAUGGGAGAGAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACUUUUGGUGACUGCAGUCGA

Get precursor sequence

Structure

        10          20        30        40        50        60  
UAAUUAUGAAAUGAACU--|      U   AU         CA  A         GAUUAGAG 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCUA  GC ACGUUAAAG        A
AGCUGACGUCAGUGGUUUU^      C   AU         UG  -         AGAGGGUA 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-92-P2c_5p*

mirBase accession

MIMAT0003209

Sequence

0- CGGGUGGAUCACGAUGCAAUUUU -23

Get sequence

Proposed targets

microrna.org: MIMAT0003209
TargetScanVert: rno-miR-363-5p
miRDB: MIMAT0003209

Mature sequence

Rno-Mir-92-P2c_3p

mirBase accession

MIMAT0003210

Sequence

43- AAUUGCACGGUAUCCAUCUGUA -65

Get sequence

Proposed targets

microrna.org: MIMAT0003210
TargetScanVert: rno-miR-363-3p
miRDB: MIMAT0003210