MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-92-P2c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-363
Paralogues Rno-Mir-92-P1a  Rno-Mir-92-P1c  Rno-Mir-92-P1d  Rno-Mir-92-P2a  Rno-Mir-92-P2d 
Orthologues Aca-Mir-92-P2c  Ami-Mir-92-P2c  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2c  Cel-Mir-92  Cfa-Mir-92-P2c  Cli-Mir-92-P2c  Cmi-Mir-92-P2c  Cpi-Mir-92-P2c  Cpo-Mir-92-P2c  Dno-Mir-92-P2c  Dre-Mir-92-P2c  Esc-Mir-92  Ete-Mir-92-P2c  Gga-Mir-92-P2c  Gja-Mir-92-P2c  Gmo-Mir-92-P2c  Hsa-Mir-92-P2c  Isc-Mir-92  Lch-Mir-92-P2c  Loc-Mir-92-P2c  Mdo-Mir-92-P2c  Mml-Mir-92-P2c  Mmu-Mir-92-P2c  Mun-Mir-92-P2c  Oan-Mir-92-P2c  Obi-Mir-92  Ocu-Mir-92-P2c  Pbv-Mir-92-P2c  Sha-Mir-92-P2c  Sme-Mir-92  Spt-Mir-92-P2c  Sto-Mir-92-P2c  Tgu-Mir-92-P2c  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xtr-Mir-92-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)
chrX: 140117108-140117172 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2c)
Mir-92-P2c chrX: 140117108-140117172 [-] UCSC Ensembl
Mir-92-P1c chrX: 140117265-140117325 [-] UCSC Ensembl
Mir-19-P2c chrX: 140117391-140117456 [-] UCSC Ensembl
Mir-17-P4c chrX: 140117522-140117582 [-] UCSC Ensembl
Mir-17-P1c chrX: 140117900-140117958 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUUAUGAAAUGAACUGUUUUGCUGUUAUCGGGUGGAUCACGAUGCAAUUUUGAUUAGAGUAAUGGGAGAGAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACUUUUGGUGACUGCAGUCGA
Get precursor sequence
Structure
        10          20        30        40        50        60  
UAAUUAUGAAAUGAACU--|      U   AU         CA  A         GAUUAGAG 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCUA  GC ACGUUAAAG        A
AGCUGACGUCAGUGGUUUU^      C   AU         UG  -         AGAGGGUA 
   120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
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Star sequence

Rno-Mir-92-P2c_5p*

mirBase accessionMIMAT0003209
Sequence
0- CGGGUGGAUCACGAUGCAAUUUU -23
Get sequence
Proposed targets microrna.org: MIMAT0003209
TargetScanVert: rno-miR-363-5p
miRDB: MIMAT0003209
Mature sequence

Rno-Mir-92-P2c_3p

mirBase accessionMIMAT0003210
Sequence
43- AAUUGCACGGUAUCCAUCUGUA -65
Get sequence
Proposed targets microrna.org: MIMAT0003210
TargetScanVert: rno-miR-363-3p
miRDB: MIMAT0003210