MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-92-P2d

Family name MIR-92 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-25
Paralogues Rno-Mir-92-P1a  Rno-Mir-92-P1c  Rno-Mir-92-P1d  Rno-Mir-92-P2a  Rno-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cja-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Eca-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2d  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmr-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Pab-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4  Xtr-Mir-92-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr12: 19307351-19307410 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2d)		 Mir-92-P2d chr12: 19307351-19307410 [-] UCSC Ensembl
Mir-17-P4d chr12: 19307555-19307615 [-] UCSC Ensembl
Mir-17-P1d chr12: 19307761-19307822 [-] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
GGACACCCACCGGGACUGGCCAGUGUUGAGAGGCGGAGACACGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCAACACUGCAGAUGUGGGG
Get precursor sequence
Structure
        10          20        30        40         50          
GGACACCCACCGGGACU--|   A UG   AG    G      C  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGACA GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUGU UC CGUUA CGG      U
GGGGUGUAGACGUCACAAC^   C GU   AG    G      -  A     -   GUCCCG 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-92-P2d_5p*
mirBase accessionMIMAT0004713
Sequence 
0- AGGCGGAGACACGGGCAAUUGCU -23
Get sequence
Proposed targets microrna.org: MIMAT0004713
TargetScanVert: rno-miR-25-5p
miRDB: MIMAT0004713
Mature sequence

Rno-Mir-92-P2d_3p
mirBase accessionMIMAT0000795
Sequence 
38- CAUUGCACUUGUCUCGGUCUGA -60
Get sequence
Proposed targets microrna.org: MIMAT0000795
TargetScanVert: rno-miR-25-3p
miRDB: MIMAT0000795