Mir-92-P2d

MirGeneDB ID

Loc-Mir-92-P2d

Family name

MIR-92 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-92-P1a Loc-Mir-92-P1d Loc-Mir-92-P2c

Orthologues

Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cja-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Eca-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P2d Lch-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG2: 57216723-57216782 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2d)

Mir-92-P2d LG2: 57216723-57216782 [-] Ensembl
Mir-19-P2d LG2: 57217593-57217657 [-] Ensembl
Mir-17-P4d LG2: 57218016-57218076 [-] Ensembl
Mir-17-P1d LG2: 57218139-57218200 [-] Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

UCAGCCAAUCUGGGACUAGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCCGGCAAUCCCAGAGGGCAUUGCACUUGUCUCGGUCUGACAGUGCUGGCACUGCGCGGCAGUGGCUGAG

Get precursor sequence

Structure

        10          20        30        40         50          
UCAGCCAAUCUGGGACUA--|    UG   AG    G     UU  -     U   GGCAAU 
                    GCCAG  UUG  AGGC GAGAC  GG GCAAU GCC      \
                    CGGUC  GAC  UCUG CUCUG  UC CGUUA CGG      C
GAGUCGGUGACGGCGCGUCA^    GU   AG    G     U-  A     -   GAGACC 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-92-P2d_5p*

mirBase accession

None

Sequence

0- AGGCGGAGACUUGGGCAAUUGCC -23

Get sequence

Mature sequence

Loc-Mir-92-P2d_3p

mirBase accession

None

Sequence

38- CAUUGCACUUGUCUCGGUCUGA -60

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