MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-17-P1d

Family name MIR-17 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-17-P1a  Loc-Mir-17-P1c  Loc-Mir-17-P2a  Loc-Mir-17-P2c  Loc-Mir-17-P4a  Loc-Mir-17-P4c  Loc-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG2: 57218139-57218200 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-92-P2d LG2: 57216723-57216782 [-] Ensembl
Mir-19-P2d LG2: 57217593-57217657 [-] Ensembl
Mir-17-P4d LG2: 57218016-57218076 [-] Ensembl
Mir-17-P1d LG2: 57218139-57218200 [-] Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GAGCGCUGGCCUGAGGGGUCCUCGCUGUGCUAAAGUGCUUACAGUGCAGGUAGUUCCUCUGUUCAGCCUACCGCAGUGUGAGCACUUCUUGCACAGCAGGGCCAAGACGCAGGUUCGCGCGG
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Structure
        10           20        30         40        50        60
GAGCGCUGGCCUGAGGG---|    C       UA-           G   A     UUCCUC 
                    GUCCU GCUGUGC   AAGUGCUUACA UGC GGUAG      U
                    CGGGA CGACACG   UUCACGAGUGU ACG CCAUC      G
GGCGCGCUUGGACGCAGAAC^    -       UUC           G   -     CGACUU 
120       110       100         90        80         70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-17-P1d_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Loc-Mir-17-P1d_3p*
mirBase accessionNone
Sequence 
40- CCGCAGUGUGAGCACUUCUUGC -62
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