MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-17-P1d

Family name MIR-17 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1b  Cmi-Mir-17-P1c  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI637193.1: 3339-3400 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P4d KI637193.1: 1684-1744 [-] UCSC Ensembl
Mir-17-P1d KI637193.1: 3339-3400 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UGGGGGUGGGGGUGGGGGGGUGGUCCAUGUUAAAGUGCUGACAGGGCAGGUAGUGAGACUUAGAUACCAGCCGCACUGUGGGGGCUUACAGCACUGCUCAACCCGACCCAGCCUCCAUUCCC
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Structure
        10              20        30        40        50        60
UGGGGGUGGGGGUGGGG------|  UG  CCA   UA    G  G    G  A   AGUGAGAC 
                       GGG  GU   UGU  AAGU CU ACAG GC GGU        U
                       CUC  CA   ACA  UUCG GG UGUC CG CCG        U
CCCUUACCUCCGACCCAGCCCAA^  GU  CG-   --    G  G    A  -   ACCAUAGA 
120       110       100         90          80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P1d_5p (predicted)
mirBase accessionNone
Sequence 
0- UAAAGUGCUGACAGGGCAGGUAG -23
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Star sequence

Cmi-Mir-17-P1d_3p* (predicted)
mirBase accessionNone
Sequence 
40- CCGCACUGUGGGGGCUUACAGC -62
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