| MirGeneDB ID | Lch-Mir-17-P1d |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-17-P1a Lch-Mir-17-P1c Lch-Mir-17-P2a Lch-Mir-17-P2c Lch-Mir-17-P4a Lch-Mir-17-P4c Lch-Mir-17-P4d |
| Orthologues | Ami-Mir-17-P1d Bta-Mir-17-P1d Cfa-Mir-17-P1d Cja-Mir-17-P1d Cmi-Mir-17-P1d Cpi-Mir-17-P1d Cpo-Mir-17-P1d Dno-Mir-17-P1d Eca-Mir-17-P1d Ete-Mir-17-P1d Gmo-Mir-17-P1d Hsa-Mir-17-P1d Laf-Mir-17-P1d Loc-Mir-17-P1d Mal-Mir-17-P1d Mml-Mir-17-P1d Mmr-Mir-17-P1d Mmu-Mir-17-P1d Ocu-Mir-17-P1d Pab-Mir-17-P1d Rno-Mir-17-P1d Sto-Mir-17-P1d Tni-Mir-17-P1d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH128754.1: 148690-148752 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P1d) |
Mir-17-P1d
JH128754.1: 148690-148752 [+]
Ensembl
Mir-17-P4d JH128754.1: 150663-150723 [+] Ensembl Mir-19-P2d JH128754.1: 155359-155420 [+] Ensembl Mir-92-P2d JH128754.1: 158754-158813 [+] Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
AGCUAGCGACUCUCUGGGGCCUCCUAGUGCUAAAGUGCUUACAGUGCAGGUAGAAACUGUCACACCACCUACUGCAUUGUGGGCACUUUCUGCACUGGCUGGCCAGUCUUCAGCACGCAGCGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGCUAGCGACUCUCUGG-- UC U-| G AAACUGU GGCC CUAGUGC AAAGUGCUUACAGUGCAG UAG \ CCGG GGUCACG UUUCACGGGUGUUACGUC AUC C GGCGACGCACGACUUCUGA UC UC^ - CACCACA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-17-P1d_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Lch-Mir-17-P1d_3p* (predicted) |
| mirBase accession | None |
| Sequence |
41- CUGCAUUGUGGGCACUUUCUGC -63
Get sequence
|
